C.melo Harukei-3 genome assemly and annotation  *Yano et. al. (2020) Communications Biology 3:432
  ver1.41 genome assembly
  (fasta)
  [donwload]
  *assembled by long read Oxford Nanoore Technology R10/R9.4.1, BioNano, mate pair
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  ver1.41 genome annotation
  (GFF3)
  [consensus ID]
  [original ID]
  
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  ver1.41 transcript sequences
  (fasta)
  [consensus ID]
  [original ID]
  
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  ver1.41 coding sequences
  (fasta)
  [consensus ID]
  [original ID]
  
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  ver1.41 protein sequences
  (fasta)
  [consensus ID]
  [original ID]
  
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Nanopore-based C.melo genomic contigs  *Yano et. al. (2020) Communications Biology 3:432
  Awamidori (Shirouri) [NARO Genebank No. JP32187]
  (fasta)
  [donwload]
  *assembled by Nanopore R9.4.1 long read
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  Ougon-9 (Makuwa) [NARO Genebank No. JP32147]
  (fasta)
  [donwload]
  *assembled by Nanopore R9.4.1 long read
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  JSS-6 (Japanese wild melon) [NARO Genebank No. JP82421]
  (fasta)
  [donwload]
  *assembled by Nanopore R9.4.1 long read
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  Honey Dew [NARO Genebank No. JP32114]
  (fasta)
  [donwload]
  *assembled by Nanopore R9.4.1 long read
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  Spicy [NARO Genebank No. JP32115]
  (fasta)
  [donwload]
  *assembled by Nanopore R9.4.1 long read
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  Natsukei-1 [NARO Genebank No. JP32098]
  (fasta)
  [donwload]
  *assembled by Nanopore R9.4.1 long read
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  Fuyukei [NARO Genebank No. JP74158]
  (fasta)
  [donwload]
  *assembled by Nanopore R9.4.1 long read
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Genome sequencing data  *Yano et. al. (2020) Communications Biology 3:432
  [Genome sequencing data of Harukei-3 melon]
  (NCBI Bioproject accession No. PRJNA603155)
  [LINK]
  (e.g. Oxford nanopore R9.4.1/R10, Pacbio RSII, Illumina Hiseq-2000, Illumina mate pair)
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  [Illumina resequencing data of five melon accessions]
  (NCBI Bioproject accession No. PRJNA603162)
  [LINK]
  (e.g. Honey Dew, Spicy, Ougon-9, JSS-6)
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Oxford nanopore RNA-seq data  *Yano et. al. (2020) Communications Biology 3:432
  [Nanopore direct RNA-seq in muskmelon Harukei-3]
  (NCBI Bioproject accession No. PRJNA603129)
  [LINK]
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  [Nanopore RNA-seq in melon leaves]
  (NCBI Bioproject accession No. PRJNA603146)
  [LINK]
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Illumina RNA-seq data  *Yano et. al. (2020) Communications Biology 3:432, Yano et. al. (2018) Plant Cell Physiol. 59:e4
  [Hiseq-2500 paired-end RNA-seq in 30 'Harukei-3' melon tissues or developmental stages]
  (DDBJ accession No. DRA006228)
  [LINK]
  (e.g. callus, expanded leaves, young leaves, root, tendril, stems, flower, fruit)
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  [Hiseq-2500/X paired-end RNA-seq in 15 'Harukei-3' melon tissues or developmental stages]
  (NCBI Bioproject accession No. PRJNA603204)
  [LINK]
  (additional tissue-wide RNA-seq dataset such as germinating seeds, seedlings, ripened fruits)
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  [Hiseq-X paired-end leaf RNA-seq in Harukei-3 melon from July to November 2018, 75 samples]
  (NCBI Bioproject accession No. PRJNA603202)
  [LINK]
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Gene prediction pipeline  *Yano et. al. (2020) Communications Biology 3:432
  [ONT4genepredict]
  (perl scripts)
  [download]
  (This pipeline predicts protein-coding genes based on nanopore RNA-seq rawdata and generates GFF3 file.)
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