Harukei-3 genome assemly and annotation
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Genome sequencing data
[Genome sequencing data of Harukei-3 melon]
(NCBI Bioproject accession No. PRJNA603155)
[LINK]
(e.g. Oxford nanopore R9.4.1/R10, Pacbio RSII, Illumina Hiseq-2000, Illumina mate pair)
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[Illumina resequencing data of five melon accessions]
(NCBI Bioproject accession No. PRJNA603162)
[LINK]
(e.g. Honey Dew, Spicy, Ougon-9, JSS-6)
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Oxford nanopore RNA-seq data
[Nanopore direct RNA-seq in muskmelon Harukei-3]
(NCBI Bioproject accession No. PRJNA603129)
[LINK]
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[Nanopore RNA-seq in melon leaves]
(NCBI Bioproject accession No. PRJNA603146)
[LINK]
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Illumina RNA-seq data
[Hiseq-2500 paired-end RNA-seq in 30 'Harukei-3' melon tissues or developmental stages]
(DDBJ accession No. DRA006228)
[LINK]
(e.g. callus, expanded leaves, young leaves, root, tendril, stems, flower, fruit)
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[Hiseq-2500/X paired-end RNA-seq in 15 'Harukei-3' melon tissues or developmental stages]
(NCBI Bioproject accession No. PRJNA603204)
[LINK]
(additional tissue-wide RNA-seq dataset such as germinating seeds, seedlings, ripened fruits)
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[Hiseq-X paired-end leaf RNA-seq in Harukei-3 melon from July to November 2018, 75 samples]
(NCBI Bioproject accession No. PRJNA603202)
[LINK]
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Software and Pipeline
[ONT4genepredict]
(perl scripts)
[download]
(This pipeline predicts protein-coding genes based on nanopore RNA-seq rawdata and generates GFF3 file.)
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