Melonet DB
  
for functional genomics study of muskmelon
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Harukei-3 ver1.41
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320 accessions
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Vcf2AA
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Univ. of Tsukuba
Lab homepage
[Last update: 17th, Sep, 2020]
Vcf2AA
    
identifying non-synonymous amino acid substitution based on NGS's vcf
query (input):
! Enter tab-delimited SNP/Indel information like below (copy/paste from VCF). #chr #position #ID #REF #ALT chr01 10553696 mutant_ID G T chr03 21481765 mutant_ID T G chr05 25718475 mutant_ID C A chr06 30905534 mutant_ID G T chr08 28448102 mutant_ID C A chr09 23263106 mutant_ID GTTC G chr10 25269220 mutant_ID G GGTCGGGC chr11 31248720 mutant_ID C A ! For trial, just click "submit" button.
select reference:
Cucumis melo [Harukei-3 reference, ver1.41]
Cucumis melo [DHL92 reference, CM4.0]
CAPS marker search:
true (verify uniqueness of primers [slow])
true (no verify [fast])
false
Submit
result will be shown below